PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 1500010069
Common NameOT_ostta15g00690
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB
Protein Properties Length: 444aa    MW: 47694.3 Da    PI: 10.634
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
1500010069genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.3e-07210262348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 
                      +W+  E e lv++v+ +G g+W+ I +           +R++ ++k++w+++l
       1500010069 210 PWSLPEVEALVRGVAHYGRGQWADIKALRLdgvsetlINRSAVDLKDKWRNLL 262
                      8*******************666665555455555555*************96 PP

2Myb_DNA-binding22.82.1e-07347396248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                       +WT  E   lvd+v + Gg +W+ I +       +Rt+ ++k++w+++l
       1500010069 347 SPWTMKEAMALVDGVDRCGGCRWTVIKKSDDpalGRRTAMDLKDKWRNLL 396
                      58*************************98777777*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.295203266IPR017930Myb domain
SuperFamilySSF466895.54E-13206264IPR009057Homeodomain-like
SMARTSM007172.1E-6207264IPR001005SANT/Myb domain
CDDcd116606.39E-18209263No hitNo description
Gene3DG3DSA:1.10.10.607.8E-12209263IPR009057Homeodomain-like
PfamPF002493.0E-6210262IPR001005SANT/Myb domain
PROSITE profilePS5129410.435341400IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-10343397IPR009057Homeodomain-like
SMARTSM007170.0018345398IPR001005SANT/Myb domain
SuperFamilySSF466894.38E-14348423IPR009057Homeodomain-like
CDDcd116604.49E-17348396No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MGWGARGGDD ARAVCAVAAF GVAPVPSARP VGVAPPVRTT TKSLSASDGS HNTTHLDGDG  60
EDAPAIEDCA STERLTQRQD AHFSGRAGHG LAVMIPQTSF DQVPLALRNA RLDALAIPDR  120
SQTPGVKSPF SAANVLLNMM ACGSDEENEA PGTRGNKRDS LHPLSVPCPK KRRTSKSLRA  180
RSNLNTLNVD AKPEAAAEAH ASGKPKAHRP WSLPEVEALV RGVAHYGRGQ WADIKALRLD  240
GVSETLINRS AVDLKDKWRN LLRVAVLPAL YKRREINGVP AEILERVRVL ASAKVEARVG  300
KHGAPRDAVG KGMSVATVKM SSPGQSDADK TEDDAGAKGV RRSKHHSPWT MKEAMALVDG  360
VDRCGGCRWT VIKKSDDPAL GRRTAMDLKD KWRNLLQLAS LPPQSRRKQE TPADFLQRVL  420
DLEAKYGGAR RKGRKPVNKM AQA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168174PKKRRTS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003083213.10.0MYB transcription factor-like
TrEMBLA0A096PAD80.0A0A096PAD8_
STRINGQ00VD90.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1276916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-13TRF-like 6
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]